SNP Profiles of PA 156 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
2._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
3._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
4._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
5._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
6._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
7._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
8._RUQ_1531
AACCCCCC____CCCCGG_CC_
9._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
10._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
11._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
12._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
13._RUQ_1531
__CCCC__CT_CC__TTCC_
14._RUQ_1531
___CC__CT_______
15._PA156[PER]
___CC____CC___CC_
16._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
17._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
18._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
19._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
20._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
21._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
22._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
23._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
24._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
25._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
26._RUQ_1531
AACC_CCGGAG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCGGCCCCCGTTAATTGGATAACCGG
1._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
2._GC-05-137-3-39
AACCGG_CCCGTTAATTGGATAACCGG
3._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
4._PA_156_[PER]
__GG__CG____ATAA_GG
5._PA_156_[PER]
__GG__CG____ATAA_GG
6._PA_156_[PER]
__GG__CG____ATAA_GG
7._PA_156_[PER]
__GG__CG____ATAA_GG
8._RUQ_1531
__GG__CG____ATAA_GG
9._PA_156_[PER]
__GG__CG____ATAA_GG
10._PA_156_[PER]
__GG__CG____ATAA_GG
11._PA_156_[PER]
__GG__CG____ATAA_GG
12._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
13._RUQ_1531
____CC____GG_AACCGG
14._RUQ_1531
__GGTT_________GG
15._PA156[PER]
____GG_TT__GG_AACCCC
16._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
17._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
18._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
19._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
20._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
21._PA_156_[PER]
__AA__CG____ATAA_CG
22._PA_156_[PER]
__AA__CG____ATAA_CG
23._PA_156_[PER]
__AA__CG____ATAA_CG
24._PA_156_[PER]
__AA__CG____ATAA_CG
25._PA_156_[PER]
__AA__CG____ATAA_CG
26._RUQ_1531
TTCCGGGG_CGAAAAAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGGGGTTAGTTGGCC
1._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
2._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
3._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
4._PA_156_[PER]
AA___CG_AGGG__AG___
5._PA_156_[PER]
AA___CG_AGGG__AG___
6._PA_156_[PER]
AA___CG_AGGG__AG___
7._PA_156_[PER]
AA___CG_AGGG__AG___
8._RUQ_1531
AA___CG_AGGG__AG___
9._PA_156_[PER]
AA___CG_AGGG__AG___
10._PA_156_[PER]
AA___CG_AGGG__AG___
11._PA_156_[PER]
AA___CG_AGGG__AG___
12._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTAGCC
13._RUQ_1531
___GGCGCCAGGG__AGTT__
14._RUQ_1531
____CG_AG____TT__
15._PA156[PER]
___GGCG____TT_TT__
16._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
17._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
18._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
19._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
20._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
21._PA_156_[PER]
AA___CG_AGTT__AG___
22._PA_156_[PER]
AA___CG_AGTT__AG___
23._PA_156_[PER]
AA___CG_AGTT__AG___
24._PA_156_[PER]
AA___CG_AGTT__AG___
25._PA_156_[PER]
AA___CG_AGTT__AG___
26._RUQ_1531
AAAAACGGCGCCAGCCCCAAAGAAGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCCC
1._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
2._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
3._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTT_CC
4._PA_156_[PER]
__TT_________CCCC
5._PA_156_[PER]
__TT_________CCCC
6._PA_156_[PER]
__TT_________CCCC
7._PA_156_[PER]
__TT_________CCCC
8._RUQ_1531
__TT_________CCCC
9._PA_156_[PER]
__TT_________CCCC
10._PA_156_[PER]
__TT__________CC
11._PA_156_[PER]
__TT_________CCCC
12._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
13._RUQ_1531
GGTT__GG______TTCC_
14._RUQ_1531
____GG_________
15._PA156[PER]
_TT_AA________CC_
16._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCCCT
17._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCCCT
18._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCCCT
19._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCCCT
20._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTT_CT
21._PA_156_[PER]
__CT_________CCCT
22._PA_156_[PER]
__CT_________CCCT
23._PA_156_[PER]
__CT_________CCCT
24._PA_156_[PER]
__CT_________CCCT
25._PA_156_[PER]
__CT__________CT
26._RUQ_1531
CC_AA_GGAAGG_GGAGCCAAGGGG
 5758596061626364656667686970
_Input profile
TTAGCCCTCTAAGGGGACAATTGGGGCT
1._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
2._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
3._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
4._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
5._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
6._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
7._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
8._RUQ_1531
__CC_CTAAGG_ACAATTGG__
9._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
10._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
11._PA_156_[PER]
____CTAAGG_ACAATTGG__
12._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
13._RUQ_1531
TTGGCCCTCTAA_GGACAATTGGGG_
14._RUQ_1531
_AG______ACAA_GGGG_
15._PA156[PER]
__GGCT_AA_GGACAA____
16._GC-05-138-3-40
TTAACCCTCTAAGGGGAAAAGTGGGGTT
17._GC-05-138-3-40
TTAACCCTCTAAGGGGAAAAGTGGGGTT
18._GC-05-138-3-40
TTAACCCTCTAAGGGGAAAAGTGGGGTT
19._GC-05-138-3-40
TTAACCCTCTAAGGGGAAAAGTGGGGTT
20._GC-05-138-3-40
TTAACCCTCTAAGGGGAAAAGTGGGGTT
21._PA_156_[PER]
__CC_CTAAGG_AAAAGTGG__
22._PA_156_[PER]
__CC_CTAAGG_AAAAGTGG__
23._PA_156_[PER]
__CC_CTAAGG_AAAAGTGG__
24._PA_156_[PER]
__CC_CTAAGG_AAAAGTGG__
25._PA_156_[PER]
__CC_CTAAGG_AAAAGTGG__
26._RUQ_1531
AAAGGGAGAGAAGGGGACAAAACCGG_
 7172737475767778798081828384
_Input profile
CCAATTCCAGAAAAAGACGGCCATACTT
1._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
2._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
3._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
4._PA_156_[PER]
_AATT_____ACGG___TT
5._PA_156_[PER]
_AATT_____ACGG___TT
6._PA_156_[PER]
_AATT_____ACGG___TT
7._PA_156_[PER]
_AATT_____ACGG___TT
8._RUQ_1531
_AATT_____ACGG___TT
9._PA_156_[PER]
_AATT_____ACGG___TT
10._PA_156_[PER]
_AATT_____ACGG___TT
11._PA_156_[PER]
_AATT_____ACGG___TT
12._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
13._RUQ_1531
________ACGG__ACTT
14._RUQ_1531
_AA______ACGG__AC_
15._PA156[PER]
CC________CC____
16._GC-05-138-3-40
CCAGCTAAAAACAAAACCGGCCATAACT
17._GC-05-138-3-40
CCAGCTAAAAACAAAACCGGCCATAACT
18._GC-05-138-3-40
CCAGCTAAAAACAAAACCGGCCATAACT
19._GC-05-138-3-40
CCAGCTAAAAACAAAACCGGCCATAACT
20._GC-05-138-3-40
CCAGCTAAAAACAAAACCGGCCATAACT
21._PA_156_[PER]
_AGCT_____CCGG___CT
22._PA_156_[PER]
_AGCT_____CCGG___CT
23._PA_156_[PER]
_AGCT_____CCGG___CT
24._PA_156_[PER]
_AGCT_____CCGG___CT
25._PA_156_[PER]
_AGCT_____CCGG___CT
26._RUQ_1531
__AACCAGAAAA_ACCCGGATACAA
 85868788899091929394    
_Input profile
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
1._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
2._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
3._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
4._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
5._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
6._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
7._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
8._RUQ_1531
CCCC_AA_CCTTTT__X_XX_XX_XX_X
9._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
10._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
11._PA_156_[PER]
CC__AA_CCTTTT__X_XX_XX_XX_X
12._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
13._RUQ_1531
___AA-CCTT___X_XX_XX_XX_X
14._RUQ_1531
_CC__CT_TT___X_XX_XX_XX_X
15._PA156[PER]
CC_________X_XX_XX_XX_X
16._GC-05-138-3-40
TTTTCCAATTCTTTTTATGGX_XX_XX_XX_X
17._GC-05-138-3-40
TTTTCCAATTCTTTTTATGGX_XX_XX_XX_X
18._GC-05-138-3-40
TTTTCCAATTCTTTTTATGGX_XX_XX_XX_X
19._GC-05-138-3-40
TTTTCCAATTCTTTTTATGGX_XX_XX_XX_X
20._GC-05-138-3-40
TTTTCCAATTCTTTTTATGGX_XX_XX_XX_X
21._PA_156_[PER]
TTTT_AA_CTTTTT__X_XX_XX_XX_X
22._PA_156_[PER]
TTTT_AA_CTTTTT__X_XX_XX_XX_X
23._PA_156_[PER]
TTTT_AA_CTTTTT__X_XX_XX_XX_X
24._PA_156_[PER]
TTTT_AA_CTTTTT__X_XX_XX_XX_X
25._PA_156_[PER]
TTTT_AA_CTTTTT__X_XX_XX_XX_X
26._RUQ_1531
GG_AG__GGAAAATTGGX_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-137-3-39

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._PA_156_[PER] GC-05-137-3-39

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._PA_156_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

5._PA_156_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER] RUQ_1531

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

11._PA_156_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

12._PA_156_[PER] GC-05-137-3-39

99.5 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

13._PA_156_[PER] RUQ_1531

98.8 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_156_[PER] RUQ_1531

95.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._PA_156_[PER] PA156[PER]

84 %
25 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] GC-05-138-3-40

74.5 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

74.5 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

74.5 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

74.5 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._PA_156_[PER]

70 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

22._PA_156_[PER]

70 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

23._PA_156_[PER]

70 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

70 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

25._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER] RUQ_1531

48.8 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240